Save Heat Tree Plots

This function saves heat tree plots stored in a list object to an output folder.

save_heat_tree_plots(htrees, format = "tiff", start_path = "output", ...)

Arguments

htrees

A named list of heat trees.

format

The format of the output image. Default: 'tiff'

start_path

The starting path of the output directory. Default: 'output'

...

An optional list of parameters to use in the output_dir function.

Value

An output directory that contains heat tree plots.

Details

This function creates an appropriate output directory, where it saves publication ready plots.

See also

output_dir

ggsave

Other Visualizations: alpha_diversity_plot(), correlation_data(), correlation_plot(), correlation_plots(), heat_tree_parameters(), heat_tree_plots(), ordination_plot(), plot_limits(), save_alpha_diversity_plots(), save_correlation_plots(), save_ordination_plots(), save_stacked_barplots(), stacked_barplot(), stacked_barplots(), top_coefficients_barplot()

Examples

if (FALSE) { # \dontrun{
if(interactive()){
# This example uses data that are no longer available in the MicrobiomeR package,
# however, they can be easily generated with \code{\link{MicrobiomeR}{as_analyzed_format}}.
library(MicrobiomeR)
analyzed_silva <- as_MicrobiomeR_format(MicrobiomeR::raw_silva_2, "analyzed_format")
h_trees <- heat_tree_plots(analyzed_silva, rank_list = c("Phylum", "Class"))
# Save to \emph{./output/heat_trees} folder.
save_heat_tree_plots(h_trees)
 }
} # }