This function gets the parameters used for the heat_tree_plots function.
heat_tree_parameters(obj, title, treatment_no, ...)
| obj | A Taxmap object. |
|---|---|
| title | The title used in the heat_tree plot. |
| treatment_no | The number of treatment groups in the data. |
| ... | Any of the heat tree parameters list below can be used to change the way the heat_tree output is displayed. However, this function acts as a default list of parameters. The members of the default list will be overridden by the dot parameters. Any variable in obj$data$stats_tax_data can be used to manipulate the heat tree parameters. Function calls from the taxa package must be done explicitly on the Taxmap object. |
A list used with do.call and the metacoder::heat_tree function.
Other Visualizations: alpha_diversity_plot,
correlation_data,
correlation_plots,
correlation_plot,
heat_tree_plots,
ordination_plots,
ordination_plot, plot_limits,
save_alpha_diversity_plots,
save_correlation_plots,
save_heat_tree_plots,
save_ordination_plots,
save_stacked_barplots,
stacked_barplots,
stacked_barplot,
top_coefficients_barplot