As Basic MicrobiomeR Format

Converts a Taxmap object to the basic_format.

as_basic_format(obj, cols = NULL, out_names = NULL)

Arguments

obj

An object to be converted to a Taxmap object with create_taxmap.

cols

Column names used for calc_taxon_abund. Default: NULL

out_names

Column names of the output used for calc_obs_props. Default: NULL

Value

A Taxmap object in the "basic_format".

Details

See the MicrobiomeR_Formats documentation.

See also

is_phyloseq_format, is_raw_format, is_basic_format, as_raw_format, order_metacoder_data

calc_taxon_abund, calc_obs_props

Other Formatting: MicrobiomeR_Formats, as_MicrobiomeR_format(), as_analyzed_format(), as_custom_format(), as_phyloseq_format(), as_raw_format(), melt_taxmap(), treatment_matrix()